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List of projects on the code repository by scientific community

We provide a list of the codes that can currently be download from the code repository arranged by scientific community. This list will be updated when new code is added at the repository.

 

General Code that is appropriate for the general VI-SEEM community.

Code related to the Climate Scientific Community

such as the Medina: source-to-source pre-processor for CUDA.

Code related to the Digital Cultural Heritage Community

such as docker files to start the Clowder platform, extractors for different datasets such as .ptm to 3D extractors or OCR for .pdf files, etc.

Code related to the Life Sciences community

includes code for XXXX and XXX, etc.

General Code

 

Code Description Contact People
user_shibboleth user_shibboleth is an ownCloud user authentication app relying on the Shibboleth Service Provider. At the current stage, this project is only intended to serve as a starting point for reimplementation and as an example for federated authentication in a PHP + Apache + mod_shib + Shibboleth2 environment, in general. Petar Jovanovic
libgpuarray Fork of the libgpuarray library (http://deeplearning.net/software/libgpuarray/). Petar Jovanovic

 

Climate Scientific Community

 

Code Description Contact People
Medina

 A MECCA - KPP Fortran to CUDA source-to-source pre-processor for CUDA enabled accelerators.

Training Material: Installation guide

Michail Alvanos
Theodoros Christoudias
X-H-stretching-potentials

 Program to generate geometries/configurations to compute X-H stretching potentials in the case of X-H stretching oscillators for free and interacting molecular species relevant to atmospheric chemistry and climate science. Geometries are generated such as to mimick as closely as possible the realistic X-H motion within the local mode approximation, keeping the center-of-mass fixed.

Training Material: README.md

Bojana Koteska
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2DSchrodingerEq

Solution for the time-independent Schrödinger equation for certain values of energy by finding the eigenvalues of energy.

Training Material: README.md

Bojana Koteska
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bound-states-of-the-Morse-well

In order to solve the bound states of the Morse oscillator well, a 100 point basis ranging from [-3,32] is used. First, the Hamiltonian matrix in the DVR basis is constucted and then it is diagonalized to determine the eigenvalues and eigenvectors. This code is written in C language and it is based on the code written in Mathematica (Bittner, Eric R. Quantum dynamics: applications in biological and materials systems. CRC Press, 2009.)

Training Material: README.md

Bojana Koteska
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VINE

Script for visualisation of WRF-Chem output.
The script is created for the visualisation of WRF-Chem output. It creates maps of distribution of dust particles (with 2.4um effective radius) on the 4 different height_levels (400, 1000, 1600, 2200 m)in pdf format.

Training Material: README.md

George Mikuchadze
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Digital Cultural Heritage Community

Code Description Contact People
CYI-Clowder Complete installation  of the clowder platform as modified by the Cyprus Institute. Also contains new and/or moidofied extractors. Finally, contains dockerfiles for all extractors and a convenient Docker Compose file to download and start the server with all the extractors. Panayiotis Charalambous
CH-CBIR Remote sensing image classification and retrieval using features obtained from convolutional neural networks (CNN). We test various network topologies, namely fully connected and convolutional networks. We also evaluate random and learned image features. Vladimir Risojevic

 

Life Sciences Community

 

Code Description Contact People
CCC

Classification of Cancer Cells

Training Material: README.md

Salman Matalgah
pACF

Program to compute the partial autocorrelation function pACF of the time-derivative of the X-H bond length in order to further calculate the partial vibrational density of states corresponding to the local X-H stretching mode, i.e. the contribution of this motion to the overall vibrational density of states - vDOS.

Training Material: README.md

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