Documentation Repository

Code/Scripts Repository

Setup and run WRF-Chem model over the south Caucasus domain

VINE: provides improved research in process-level understanding considering to the coupling and feedbacks above the territory of Georgia: dust emission; dust ageing; dust deposition.

VisTrails Training Workflow 

VisTrails is an open-source scientific workflow and provenance management system that provides support for simulations, data exploration and visualization. Whereas workflows have been traditionally used to automate repetitive tasks, for applications that are exploratory in nature, such as simulations, data analysis and visualization, very little is repeated---change is the norm. As an engineer or scientist generates and evaluates hypotheses about data under study, a series of different, albeit related, workflows are created while a workflow is adjusted in an interactive process. VisTrails was designed to manage these rapidly-evolving workflows.

WRF Installation Workflow

WRF Check Output and Troubleshooting workflow

Weather Research and Forecasting Model

WRF is a next-generation mesoscale numerical weather prediction system designed for both atmospheric research and operational forecasting applications. It features two dynamical cores, a data assimilation system, and a software architecture supporting parallel computation and system extensibility. The model serves a wide range of meteorological applications across scales from tens of meters to thousands of kilometers. The effort to develop WRF began in the latter part of the 1990's and was a collaborative partnership of the National Center for Atmospheric Research (NCAR), the National Oceanic and Atmospheric Administration (represented by the National Centers for Environmental Prediction (NCEP) and the (then) Forecast Systems Laboratory (FSL)), the (then) Air Force Weather Agency (AFWA), the Naval Research Laboratory, the University of Oklahoma, and the Federal Aviation Administration (FAA).

Tuning and Validation of the RegCM

Adaptation and tuning of the RegCM model for the Balkan Peninsula and Bulgaria and thus development of a methodology able to predict possible changes of the regional climate for different global climate change scenarios and their impact on spatial/temporal distribution of precipitation, hence the global water budgets, to changes of the characteristics and spatial/temporal distribution of extreme, unfavorable and catastrophic events (drought, storms, hail, floods, fires, sea waves, soil erosion, etc.). All these changes will have influence on the ecosystems and on practically all sectors of the economy and human activity and consequently on the quality of life.

Atmospheric Composition Impact on Quality of Life and Human Health

Development of a methodology and performing reliable, comprehensive and detailed studies of the impact of lower atmosphere parameters and characteristics on the quality of life (QL) and health risks (HR) for the population in our country.

Accurate Prediction and Investigation of Weather and Climate in Armenia and South Caucasus

Methods and methodologies for accurate weather prediction and climate change based on series of experiments, as mountainous terrain of the country, the apparent ruggedness of the terrain, the big difference between relative altitudes, as well as atmospheric general circulation features make it challenge. This is a WRF application.

Calculation of Anharmonic X-H Stretching Frequencies of Intramolecular Vibrational Chromophores Relevant to Atmospheric Chemistry

In the present scientific workflow, through the example of this simplest organic acid an illustration of the approach to compute the anharmonic vibrational frequencies of characteristic X-H intramolecular chromophores which are treatable within 1D approximation (i.e. as one-dimensional anharmonic oscillators) will be shown. The approach is straightforwardly extendable to an arbitrary X-Y oscillator.

Dioptra Pipeline   

(To access the corresponding documents you need to first sign up for a Clowder account)

The metadata schema developed by the Science and Technology for Archaeology Research Center (STARC) has the goal to enable data interoperability and access to the digital resources stored in the local repository. Its structure allows retrieving models, activities, decision and answers the research question on how data can be used for data interpretation and re-used to perform further analysis and post-processing of raw data. The datasets stored in STARC repository refer to 2D and 3D cultural heritage data including archaeological sites, museum objects and architectonic elements. The schema is mostly based on LIDO and CARARE ones and is CIDOC-CRM compliant. The novelty of this metadata schema is the subset of metadata that has been designed to allow recording the information about the provenance of the digital objects, a particularly important aspect when the objects are 3D digital replicas of cultural objects.

Documenting and streamlining operational procedures for management and use of cultural heritage data. Application will enable efficient data creation and management for Institutions of culture as well as easier access to said data for general population.

THERMOGENOME Pipeline

THERMOGENOME Perl script

CNCADD Pipeline

CNCADD Fortran Code

Mol_Surf Workflow

Accompanying Scripts: prod.mdp, queue_script.pbs, heat.mdp, min.mdp, relax.mdp, surfactants_water.top

Mol_Surf: Recommended pipeline for equilibrium molecular dynamics simulations with Gromacs 5.1 of surfactants adsorbed at the vacuum/water interface as well as the accompanied scripts/files.

MULTIDRUG Workflow

MULTIDRUG Workflow Chart

Accompanying Scripts: heat.mdp, membrane.top, min_env.mdp, min_whole.mdp, prod.mdp, relax.mdp, run_mdrun.pbs